PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g16650
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 174aa    MW: 19693.2 Da    PI: 10.4442
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g16650genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-055072123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C++ F ++  L  H++ H
  CA01g16650 50 FECQYCHREFANSQALGGHQNAH 72
                89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.38E-64777No hitNo description
Gene3DG3DSA:3.30.160.603.8E-44876IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.8E-64974IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.7395077IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MGESSLHSSL SSSSPRQVKL FGFQVTECDK TTEPPPPPPQ PSHDVEGKRF ECQYCHREFA  60
NSQALGGHQN AHKKERQRTR RAHQIGDHQP RFRQVVPMIN AHAVRSGLIN NNNKSIMSRY  120
YGARLRSQVL SGAPLRFQIH MRQQQLMAVQ NPVDINNNEA EVDLHLRLAP SRD*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080072.12e-73PREDICTED: zinc finger protein 6-like
TrEMBLK4AWE52e-71K4AWE5_SOLLC; Uncharacterized protein
STRINGSolyc01g060420.2.15e-71(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105631724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.19e-15C2H2 family protein